Manjanggul has an open entrance exposed by collapse of the ceiling. Debris from rockfalls is thus distributed near the entrance. The temperature difference between the inside and outside of lava tube has led to the growth of unique vegetation and living organisms. The first section of the lava tube starting from the entrance is largely divided into the upper and lower lava tubes, each stretching approximately 900 meters and 1.5 kilometers, respectively. Due to safety reasons, the first section remains closed to the public.
When lava flows in a tube, the level of the flow is often recorded on the walls. These features are called lava flowlines. Numerous flowlines are found in Manjanggul Lava Tube, indicating that the level of the flows was falling continuously inside the active tube.
In Manjanggul Lave Tube, large and small passages occur repetitively. Continuous supply of hot lava into the tube causes thermal erosion of the tube's floor whereas the lava can be accreted on the tube-ceiling, resulting in the irregular height of the tube. Near narrow passages, Manjanggul opens up into a section with wider and higher ceilings. The dome-like topography of the ceiling is called a "cupola".
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